Enter a molecular formular and optionally further
restrictions into the form below.
Alternatively, choose one of the examples.
After pressing "START MOLGEN", the corresponding molecular structures will be generated. You can see the number of generated structures as well as the first 1000 structures in the molecule viewer on the right.
Please note that in this online version (a restricted version of MOLGEN 5.0), the computation time is limited to 5 minutes per job. Further, the most powerful restrictions of the commercial versions of MOLGEN, namely the possibilities to prescribe and to forbid the occurence of substructures in the generated structures, are not available in this online version. The filter for aromatic duplicates is turned on by default.
You either choose to compute the 3D coordinates (using OpenBabel) on the server, which may fail due to the 5 minutes limit, or do the 3D individually for each structure by clicking on "3D PLACEMENT".
When using MOLGEN online for your scientific publications, please cite
Gugisch, R., Kerber, A., Kohnert, A., Laue, R., Meringer, M., Rücker, C., Wassermann, A.: MOLGEN 5.0, A Molecular Structure Generator (2016) Advances in Mathematical Chemistry and Applications: Revised Edition, 1, pp. 113-138.